miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|110358755|gb|EC923204.1|EC923204 TTTTTTTTTTTTTTTAGTGATTGAACTTCACACACATGAAGCTCTGTATGATAGCTTAAATCTTAAAATTGTATATATAG
AGTACAGCAACTGTATATGAAAGAGCTCATCAGTAAAATATAGCACACTGGCTTCCTGTCTAGAATGCATAGCATCATGA
GCAATCACCCTTAGAAATTAGCAGAGTGACTGCTCATGATATTATCTCATTCCATGAAAGCTTGAGCATGCTACACAGCC
ACACATGTACCGCGGATCAAAACCCTCCACCGAGAGCCGGAGACCAATAATCGGCTCCATTGTCACTTCCAACCTGCTGA
GTGCACGAAACCGGAACCAGGCACAACCCTCTACTCTTCAAGTCCTTTGGTGCATCTTGTGTATCCTGCTGATTAGGTGC
TGATCCTTTTCTTTTGAGGCAGTTGTCGTTCAGGAGCTGACCAGGGTCTTTGGGAAATATACAATTCATTTCGCCTTGAA
CACACTGTTGGTTCCTCATGTTTCCTGATGCATTGCCCAAGTACGGAGAGCTAAGGGCCTCAATTTGACCCTGAAGGAAT
CTGATATACCCAATAGCTTCTAACAAGACAGAAGCAGTGTCAGTCTTTCCAAATGGGGAAACTAACTGGTGAAGGGCTGT
TATTCTATCACCCAGCTTCTCCTTTCTCACCTTTAGTGGTGGTTGGCTCGGAGAGGGTTGAACCCTAGCCTTTTTACATG
CCCCACCAGTCTCCGTGCTGTTACACTCAGTTGAATGATCTGCATGTTGATTCCTAACACCAGCCTTGTTAGAGAAGTCT
AACCTCGTGC




Most similar to sp|Q8S3D1|BH068_ARATH

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q8S3D1|BH068_ARATH Transcription factor bHLH68 OS=Arabidopsis
           thaliana GN=BHLH68 PE=2 SV=2
          Length = 407

 Score =  240 bits (612), Expect = 1e-62
 Identities = 130/191 (68%), Positives = 150/191 (78%), Gaps = 13/191 (6%)
 Frame = -3

Query: 802 LDFS-NKAGV-----RNQHADHSTECNSTETGGAC-KKARVQPSPS-QPPLKVRKEKLGD 647
           LDFS N  G+     R+   D S+ECNS E GG+  KK R+QPSPS Q  LKVRKEKLG 
Sbjct: 212 LDFSSNHNGLHLSEGRHTPPDRSSECNSLEIGGSTNKKPRLQPSPSSQSTLKVRKEKLGG 271

Query: 646 RITALHQLVSPFGKTDTASVLLEAIGYIRFLQGQIEALSSPYLG-NASGNMRNQQCVQGE 470
           RI ALHQLVSPFGKTDTASVL EAIGYIRFLQ QIEALS PY G  ASGNMR+QQ +QG+
Sbjct: 272 RIAALHQLVSPFGKTDTASVLSEAIGYIRFLQSQIEALSHPYFGTTASGNMRHQQHLQGD 331

Query: 469 MNCIFPKDPGQLLNDNCLKRKGSAPNQQDTQDA----PKDLKSRGLCLVPVSCTQQVGSD 302
            +CIFP+DPGQL+ND C+KR+G++ +  D Q+A     KDL+SRGLCLVP+SCT QVGSD
Sbjct: 332 RSCIFPEDPGQLVNDQCMKRRGASSSSTDNQNASEEPKKDLRSRGLCLVPISCTLQVGSD 391

Query: 301 NGADYWSPALG 269
           NGADYW+PALG
Sbjct: 392 NGADYWAPALG 402